PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MY2WL
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 402aa    MW: 44927.4 Da    PI: 5.8691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MY2WLgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12336381655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Araip.MY2WL 336 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 381
                  689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288330380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16333392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-12334385No hitNo description
Gene3DG3DSA:4.10.280.107.5E-16335391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-14336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9336381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MESDLQAPSS NGLTRYRSAP SSYFTDIIDR EFYEHIFNRP SSPETERVFS RFMNSLRDDA  60
APEDDSLHLD SSSVKEEHDI TPSQPLLFQH HQQQQQQNNV NSFNYQSTSR PPLPNQNQNL  120
ASSGGVEGVY SNNNNNNNRL PQTKNQSNLV RHSSSPAGLF SQIHIENGYV VDMRGMGTLG  180
AVNKSVEEVK FSSSRTRRLK NPQNYSSSAS GRMSSIAEIG NRDSREDNPD AEAFGETQGE  240
DFITELAPWD DSVAVNDIVA GLKRFRDDDV KPFSSGLNAA ETQNESRGQQ AAPLAHQMSL  300
PNTSAEMAAI EKFLQFSDSV PCKIRAKRGC ATHPRSIAER VRRTKISERM RKLQDLVPNM  360
DKQTNTADML DLAVDYIKDL QKQVETLSDC QAKCTCSSKP QQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954351e-116BT095435.1 Soybean clone JCVI-FLGm-25M5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016171225.10.0PREDICTED: transcription factor bHLH122-like
TrEMBLA0A0B2RNC51e-171A0A0B2RNC5_GLYSO; Transcription factor bHLH122
STRINGGLYMA15G03740.41e-171(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.18e-69bHLH family protein